Attention: : Confluence is not suitable for the storage of highly confidential data. Please ensure that any data classified as Highly Protected is stored using a more secure platform.
If you have any questions, please refer to the University's data classification guide or contact ict.askcyber@sydney.edu.au
Services
RNAseq Analysis
Bulk (mRNA, Total RNA, short RNA, Capture), Single Cell
Design, QC, mapping, normalising, analysis, graphics
“Bespoke” data-wrangling/ dataviz / workflows
Functional annotation (pathway, gene set, external dataset)
Custom organism/transgene mapping and analysis
Integration with other data (chIP-seq, WGS, PCR etc)
Sample Composition | Deconvolution Analysis | Differential Expression | Pathway Analysis | Interactions | Time Course Analysis |
|---|---|---|---|---|---|
 |  | ||||
scRNAseq Specific Analysis
tSNE/UMAP Viz | Supervised/Unsupervised Clustering | Pseudotime | Cell-cell interactions |
|---|---|---|---|
Other Analysis Services
Cytometry: Clustering, differential abundance and differential state analysis using CATALYST and custom scripts
T-cell repertoire analysis (MIXCR, VDJtools, TCR and Immunarch packages, cross-referencing with vdjDB, clone tracking)
Single Cell CRISPR screen fitness testing
Proteomics data integration and comparison
Preparation and analysis of online data (SRA/GEO)
Contact us (brian.gloss [at] sydney.edu.au) if there is something missing here that you would like to do.